homesearchblastordernews
collembase

Search options

On this page it is only possible to search for blast annotations and/or for cluster IDs. For sequence similarity (BLAST) go to our Collembase BLAST page.

Database information

The ESTs were processed using the PartiGene pipeline. Sequences were blasted against several Genbank databases. Results were stored in a PostgreSQL database.

Content

  • Folsomia candida

    • - Normalized: 7329 ESTs
    - Phenantrene (SSH): 705 ESTs
    - Cadmium (SSH): 808 ESTs
    - Chlorpyrifos (SSH): 225 ESTs
    - Desiccation 6h (SSH): 150 ESTs
    - Desiccation 24h (SSH): 170 ESTs
    - 6449 clusters (Fcc)

  • Orchesella cincta

    • - 1536 ESTs
    - 963 clusters (Occ)

  • Onychiurus arcticus

    • - 16379 ESTs
    - 9541 clusters (Oac)

  • Cryptopygus antarcticus

    • - 1180 ESTs
    - 773 clusters (Cac)

  • Anurida maritima

    • - 4371 ESTs
    - 2422 clusters (Amc)

Select organism


Retrieve a specific cluster
Enter a PartiGene-style cluster ID (e.g. Fcc00451 / Fcc00101)


Select organism

Search by BLAST annotation
Library specific
Text      Minimum e value
To view all clusters for an organism just leave the text box blank


Select organism

Search for a sequence ID
Enter an EST ID (e.g Fc_cad_02B02)

Gene Ontology

Search for Gene Ontology
Select organism
Enter an G.O. ID or term ID (e.g. GO:0000001 / mitochondrion inheritance)

© 2005-2009, design by NOW:design