NCBI GenBank

This standalone Collembase BLAST server was designed by NCBI.

Orchesella cincta

Folsomia candida

Onychiurus arcticus

Acknowledgements

Onychiurus arcticus EST dataset is generated by M.S. Clark and co-workers: BMC Genomics 2007, 8:475

Orchesella cincta EST dataset is generated by D. Roelofs, J. Ellers, J. Mariën and T. Janssens

The implementation of this BLAST server was made possible by Bart van Houte, IBVU.

Links

Collembase Blast Server

Choose program to use and database to search:

Program Database

Enter sequence below in FASTA format

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Set subsequence: From To

The query sequence is filtered for low complexity regions by default.
Filter Low complexity Mask for lookup table only

Expect Matrix Perform ungapped alignment

Query Genetic Codes (blastx only)

Database Genetic Codes (tblast[nx] only)

Frame shift penalty for blastx

Other advanced options:

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Database updated: Januari 2008